Bioengineering Hyperbook

Department of Bioengineering


Coral Polyps and the Chemical Symphony of Survival

Coral polyps, biomineralization, crystals, calcification, symbiotic relationships, cellular respiration, coral bleaching

Michael Beyrouthy, Cris Izzi, Claudio Petroni, Alex Tsiskakis

The Metabolism and Movement of Dinoflagellate from a Chemical Perspective

Dinoflagellates, toxins, photosynthesis, bioluminescence, sensing, metabolism

Thalia Azadian, Arda Barlas, Sophia Chen, Simon Girard

Mathematical Analysis of Amoebas

Motility, crystal, optimization, maze-solving, swarm, oxidation

Hailey Jukes, Adele Omichinski, Nicholas Da-Costa-Bastidas, Gil Qin

Exploring the Mathematics of Unicellular Green Algae (Chlamydomonas Reinhardtii)

Unicellular green algae, synchronization, fluid dynamics, optimization, population dynamics, growth modeling

Ai-Lan Ji-Eun Nguyen, Tesnim Obey, Anders Schwarz, Jackson Yu

Copepods Through the Lens of Math

Low-Reynolds, swimming, diel vertical migration, reflectance, molting, coloration, crustacean

Johanna Turton, Melodi Rousset, Philippe Mercier, Tanjin Sultana

Mechanics and Optics of Cyanobacteria: How to Survive over Billions of Years

Survival mechanisms, photosynthesis, buoyancy regulation, light-sensing or phototaxis, bacteria, gliding motility, biofilm

Maria Delgopiatof, Max Bai, Sierra Bushey, Valerie Syme

Underwater Chemists: Discussion of Design Solutions in Tintinnid Ciliates

Tintinnids, digestion, reproduction, navigation, bioindicators, biochemical pathways

Alexa Bailey, Lou Cubberly, Margaux-Blondin Routhier, Niall Slack-Watkins

Discussion of Nature’s Design Solutions in Tintinnids: Masters of Microzooplankton Survival

Tintinnids, plankton, geometry, buoyancy, swimming, aquatic ecosystems

Alexa Bailey, Lou Cubberly, Margaux-Blondin Routhier, Niall Slack-Watkins

The Mathematics of Tardigrade Behavior and Development

Tardigrades, 3D modeling, feeding, optimization, allometry, trophic networks

Luccia Jabbour, Eden Karp-Foster, Jeremy Lachance, Wadi Zahka

The Biochemical Features of Tardigrades and Their Roles in Maintaining Cellular Functional Integrity

Tardigrades, cryptobiosis, reactive oxygen species, DNA repair mechanisms, biochemistry, antioxidants

Luccia Jabbour, Eden Karp-Foster, Jeremy Lachance, Wadi Zahka

The Physics of Coral Polyps

Coral polyps, hydrodynamics, sensing, feeding, anisotropy, photoreceptors

Michael Beyrouthy, Cris Izzi, Claudio Petroni, Alex Tsiskakis

Magnetic Marvels: A Mathematical Exploration of Magnetotactic Bacteria

Magnetotactic bacteria, crystals, symmetry, geometry, statistical mechanics, chemotaxis

Alex Gagnon, Catriona Kirk, Jason Li, Sofian Martinais

A Physical Analysis of Magnetotactic Bacteria: Nature’s Microscopic Compass as a Solution to a Motile Biotope

Magnetotactic bacteria, phototaxis, aerotaxis, sensing, fluid dynamics, swimming

Alex Gagnon, Catriona Kirk, Jason Li, Sofian Martinais

Mathematical Modelling of Dinoflagellate Swimming, Population Dynamics and Interactions with Other Organisms

Dinoflagellates, vertical migration, population modeling, growth modeling, carrying capacity

Thalia Azadian, Arda Barlas, Sophia Chen, Simon Girard

Physical Principles Governing the Movement of Dinoflagellates and The Implications for Their Interactions in Aquatic Ecosystems

Dinoflagellates, flagella, swimming, kinematics, Reynolds number, fluid dynamics

Thalia Azadian, Arda Barlas, Sophia Chen, Simon Girard

Mathematical Models of Diatoms: Understanding Their Complex Shape, Reproduction and Chain Formation

Diatoms, geometry, Gielis formula, structural functionality, fractals

Peter Matthews-Crochetiere, Daniel Ibrahim, Wenan Liao, Cedric Mackay

Life-Sustaining Processes of the Diatom

Diatoms, life cycles, biomineralization, reproduction, reactive oxygen species, biochemistry

Peter Matthews-Crochetiere, Daniel Ibrahim, Wenan Liao, Cedric Mackay

Frustules: Design solutions in Diatoms

Diatoms, frustules, elasticity, light properties, buoyancy

Peter Matthews-Crochetiere, Daniel Ibrahim, Wenan Liao, Cedric Mackay

The Physical Properties and Interactions of Coccolithophores

Coccolithophores, calcification, vestigial haptonema, buoyancy, carbon cycle, geology

Megan Farrow, Zackary Murphy, Minh Tri Pham, Jia Yi Yu

Exploring Aquatic Fungi Through Mathematical Tools

Aquatic fungi, mathematical models, population modeling, decomposition, bioremediation

Izabela Junqueira Magalhaes, Kristina Kerkelova, Ruizhi Liu, Yasmine Sadr Kaufmann